Genomic Selection for Resilient Crop Breeding in South Punjab

Dataset Description

For this project, entitled "Genomic Research for Wheat Genes Prediction in South Punjab", data was supplied by the Supervisor and is comprised of two main aspects: genotypic data (SNPs) and phenotypic data (agronomic traits). Such datasets serve as the foundation on which to search for the genetic relationships with important wheat traits across the South Punjab area.

Data Sources: Two datasets were used in this research:

• Genotypic Data: The genotypic dataset has 37,373 SNP (Single Nucleotide Polymorphism) marker data for the same 196 genotypes. Each SNP represents a genetic variation point.
• Phenotypic Data: Agronomic traits collected from wheat genotypes.

Genotypic Dataset Column Description

Column Name	Description
rs	SNP identifier (e.g., 1A_1208114)
alleles	Possible allelic variation at the SNP site (e.g., A/G)
chrom	Chromosome location (e.g., 1A, 3B)
pos	Physical position on the chromosome
strand	DNA strand direction (+ or -)
assembly	Reference genome assembly version
center	Data generating center
protLSID	Protocol identifier (usually NA)
assayLSID	Assay identifier (technical ID)
panelLSID	Panel ID used in SNP genotyping
QCcode	Quality control code (optional)

Phenotypic Dataset Column Description

Column Name	Description
Genotypes	Wheat variety/cultivar name
DTH_2022-23	Days to heading in 2022-23
SL_2022-23	Spike length (cm)
PH_2022-23	Plant height (cm)
NDVI_2022-23	Normalized Difference Vegetation Index
GPS_2022-23	Grains per spike
TGW_2022-23	Thousand grain weight
Plant height	General plant height
Spikes per meter square	Number of spikes/m²
FLA Average	Flag leaf area
NDVI	General NDVI value
Spike length	Spike length (cm)
Grain per spike	Avg. grains per spike
Spikes Length	Spikes/m² (repeat)
TGW	Thousand grain weight (repeat)
Yield per meter square	Grain yield per m²
Days to heading	Sowing to heading duration